1. Structure
  2. Arrays
  3. Tutorials
  4. Performance
  5. Compression
  • Home
  • What is TileDB?
  • Get Started
  • Explore Content
  • Accounts
    • Individual Accounts
      • Apply for the Free Tier
      • Profile
        • Overview
        • Cloud Credentials
        • Storage Paths
        • REST API Tokens
        • Credits
    • Organization Admins
      • Create an Organization
      • Profile
        • Overview
        • Members
        • Cloud Credentials
        • Storage Paths
        • Billing
      • API Tokens
    • Organization Members
      • Organization Invitations
      • Profile
        • Overview
        • Members
        • Cloud Credentials
        • Storage Paths
        • Billing
      • API Tokens
  • Catalog
    • Introduction
    • Data
      • Arrays
      • Tables
      • Single-Cell (SOMA)
      • Genomics (VCF)
      • Biomedical Imaging
      • Vector Search
      • Files
    • Code
      • Notebooks
      • Dashboards
      • User-Defined Functions
      • Task Graphs
      • ML Models
    • Groups
    • Marketplace
    • Search
  • Collaborate
    • Introduction
    • Organizations
    • Access Control
      • Introduction
      • Share Assets
      • Asset Permissions
      • Public Assets
    • Logging
    • Marketplace
  • Analyze
    • Introduction
    • Slice Data
    • Multi-Region Redirection
    • Notebooks
      • Launch a Notebook
      • Usage
      • Widgets
      • Notebook Image Dependencies
    • Dashboards
      • Dashboards
      • Streamlit
    • Preview
    • User-Defined Functions
    • Task Graphs
    • Serverless SQL
    • Monitor
      • Task Log
      • Task Graph Log
  • Scale
    • Introduction
    • Task Graphs
    • API Usage
  • Structure
    • Why Structure Is Important
    • Arrays
      • Introduction
      • Quickstart
      • Foundation
        • Array Data Model
        • Key Concepts
          • Storage
            • Arrays
            • Dimensions
            • Attributes
            • Cells
            • Domain
            • Tiles
            • Data Layout
            • Compression
            • Encryption
            • Tile Filters
            • Array Schema
            • Schema Evolution
            • Fragments
            • Fragment Metadata
            • Commits
            • Indexing
            • Array Metadata
            • Datetimes
            • Groups
            • Object Stores
          • Compute
            • Writes
            • Deletions
            • Consolidation
            • Vacuuming
            • Time Traveling
            • Reads
            • Query Conditions
            • Aggregates
            • User-Defined Functions
            • Distributed Compute
            • Concurrency
            • Parallelism
        • Storage Format Spec
      • Tutorials
        • Basics
          • Basic Dense Array
          • Basic Sparse Array
          • Array Metadata
          • Compression
          • Encryption
          • Data Layout
          • Tile Filters
          • Datetimes
          • Multiple Attributes
          • Variable-Length Attributes
          • String Dimensions
          • Nullable Attributes
          • Multi-Range Reads
          • Query Conditions
          • Aggregates
          • Deletions
          • Catching Errors
          • Configuration
          • Basic S3 Example
          • Basic TileDB Cloud
          • fromDataFrame
          • Palmer Penguins
        • Advanced
          • Schema Evolution
          • Advanced Writes
            • Write at a Timestamp
            • Get Fragment Info
            • Consolidation
              • Fragments
              • Fragment List
              • Consolidation Plan
              • Commits
              • Fragment Metadata
              • Array Metadata
            • Vacuuming
              • Fragments
              • Commits
              • Fragment Metadata
              • Array Metadata
          • Advanced Reads
            • Get Fragment Info
            • Time Traveling
              • Introduction
              • Fragments
              • Array Metadata
              • Schema Evolution
          • Array Upgrade
          • Backends
            • Amazon S3
            • Azure Blob Storage
            • Google Cloud Storage
            • MinIO
            • Lustre
          • Virtual Filesystem
          • User-Defined Functions
          • Distributed Compute
          • Result Estimation
          • Incomplete Queries
        • Management
          • Array Schema
          • Groups
          • Object Management
        • Performance
          • Summary of Factors
          • Dense vs. Sparse
          • Dimensions vs. Attributes
          • Compression
          • Tiling and Data Layout
          • Tuning Writes
          • Tuning Reads
      • API Reference
    • Tables
      • Introduction
      • Quickstart
      • Foundation
        • Data Model
        • Key Concepts
          • Indexes
          • Columnar Storage
          • Compression
          • Data Manipulation
          • Optimize Tables
          • ACID
          • Serverless SQL
          • SQL Connectors
          • Dataframes
          • CSV Ingestion
      • Tutorials
        • Basics
          • Ingestion with SQL
          • CSV Ingestion
          • Basic S3 Example
          • Running Locally
        • Advanced
          • Scalable Ingestion
          • Scalable Queries
      • API Reference
    • AI & ML
      • Vector Search
        • Introduction
        • Quickstart
        • Foundation
          • Data Model
          • Key Concepts
            • Vector Search
            • Vector Databases
            • Algorithms
            • Distance Metrics
            • Updates
            • Deployment Methods
            • Architecture
            • Distributed Compute
          • Storage Format Spec
        • Tutorials
          • Basics
            • Ingestion & Querying
            • Updates
            • Deletions
            • Basic S3 Example
            • Running Locally
          • Advanced
            • Versioning
            • Time Traveling
            • Consolidation
            • Distributed Compute
            • RAG LLM
            • LLM Memory
            • File Search
            • Image Search
            • Protein Search
          • Performance
        • API Reference
      • ML Models
        • Introduction
        • Quickstart
        • Foundation
          • Basics
          • Storage
          • Cloud Execution
          • Why TileDB for Machine Learning
        • Tutorials
          • Ingestion
            • Data Ingestion
              • Dense Datasets
              • Sparse Datasets
            • ML Model Ingestion
          • Management
            • Array Schema
            • Machine Learning: Groups
            • Time Traveling
    • Life Sciences
      • Single-cell
        • Introduction
        • Quickstart
        • Foundation
          • Data Model
          • Key Concepts
            • Data Structures
            • Use of Apache Arrow
            • Join IDs
            • State Management
            • TileDB Cloud URIs
          • SOMA API Specification
        • Tutorials
          • Data Ingestion
          • Bulk Ingestion Tutorial
          • Data Access
          • Distributed Compute
          • Basic S3 Example
          • Multi-Experiment Queries
          • Appending Data to a SOMA Experiment
          • Add New Measurements
          • SQL Queries
          • Running Locally
          • Shapes in TileDB-SOMA
          • Drug Discovery App
        • Spatial
          • Introduction
          • Foundation
            • Spatial Data Model
            • Data Structures
          • Tutorials
            • Spatial Data Ingestion
            • Access Spatial Data
            • Manage Coordinate Spaces
        • API Reference
      • Population Genomics
        • Introduction
        • Quickstart
        • Foundation
          • Data Model
          • Key Concepts
            • The N+1 Problem
            • Architecture
            • Arrays
            • Ingestion
            • Reads
            • Variant Statistics
            • Annotations
            • User-Defined Functions
            • Tables and SQL
            • Distributed Compute
          • Storage Format Spec
        • Tutorials
          • Basics
            • Basic Ingestion
            • Basic Queries
            • Export to VCF
            • Add New Samples
            • Deleting Samples
            • Basic S3 Example
            • Basic TileDB Cloud
          • Advanced
            • Scalable Ingestion
            • Scalable Queries
            • Query Transforms
            • Handling Large Queries
            • Annotations
              • Finding Annotations
              • Embedded Annotations
              • External Annotations
              • Annotation VCFs
              • Ingesting Annotations
            • Variant Statistics
            • Tables and SQL
            • User-Defined Functions
            • Sample Metadata
            • Split VCF
          • Performance
        • API Reference
          • Command Line Interface
          • Python API
          • Cloud API
      • Biomedical Imaging
        • Introduction
        • Foundation
          • Data Model
          • Key Concepts
            • Arrays
            • Ingestion
            • Reads
            • User Defined Functions
          • Storage Format Spec
        • Quickstart
        • Tutorials
          • Basics
            • Ingestion
            • Read
              • OpenSlide
              • TileDB-Py
          • Advanced
            • Batched Ingestion
            • Chunked Ingestion
            • Machine Learning
              • PyTorch
            • Napari
    • Files
  • API Reference
  • Self-Hosting
    • Installation
    • Upgrades
    • Administrative Tasks
    • Image Customization
      • Customize User-Defined Function Images
      • AWS ECR Container Registry
      • Customize Jupyter Notebook Images
    • Single Sign-On
      • Configure Single Sign-On
      • OpenID Connect
      • Okta SCIM
      • Microsoft Entra
  • Glossary
  1. Structure
  2. Arrays
  3. Tutorials
  4. Performance
  5. Compression

Compression Performance

arrays
foundation
performance
compression
Learn about the factors to consider when implementing array compression, as well as why you should use compression for your arrays.
Note

Before reading onward, make sure to visit the following sections:

  • Key Concepts: Compression
  • Tutorials: Compression

You should always consider compression when creating an array, as it can reduce the storage consumption of your array. It may also boost the average read query time, in case the I/O savings due to the reduced quantity of data fetched from storage outweighs the extra computational overhead of decompression. TileDB applies compression at the tile level. Thus, tiling has an impact on compression (visit Performance: Tiling for more details on choosing the tile size and shape).

Choosing a particular compression filter for attributes (in both dense and sparse arrays) and dimensions (applicable only to sparse arrays for the materialized cell coordinates) highly depends on the nature of the dataset and, specifically, the attribute or dimension data type and values. TileDB offers a wide range of compression filters that should work with any use case.

Each of the solutions offered by TileDB gives some strongly recommended defaults chosen after a lot of experimentation. However, your use case and datasets may be different. Thus, you should always test empirically what compression filter works for what dimensions and attributes before defining your final array schema and ingesting large quantities of data in your arrays.

Dimensions vs. Attributes
Tiling and Data Layout